AMBER-based Portal Server for NMR structures (AMPS-NMR)

Amber (acronym to Assisted Model Building with Energy Refinement) is a suite of programs 1N3L that allow users to perform molecular dynamics (MD) simulations on biological systems. This web portal makes available the entire functionality of AMBER, in particular (but not only) using NMR-derived information as restraints for MD.


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To use AMPS-NMR you have to register to WeNMR grid infrastructure. You can access a trial version of the service using username guest and password guest NB: the trial version will not allow you to submit jobs on the WeNMR grid.

Reference for use of the AMPS-NMR server

Bioinformatics, 27, 2384-2390 (2011). A Grid-enabled web portal for NMR structure refinement with AMBER. Bertini I, Case DA, Ferella L, Giachetti A, Rosato A. Pubmed link